Publications

Selected Publications

Contact area-dependent cell communications and the morphological invariance of ascidian embryogenesis

Léo Guignard*, Ulla-Maj Fiuza*, Bruno Leggio, Julien Laussu, Emmanuel Faure, Gael Michelin, Kilian Biasuz, Lars Hufnagel, Grégoire Malandain, Christophe Godin and Patrick Lemaire

Science, 2020

Featured in:

Related code:

astec-segmentation/astec-2019-published

 leoguignard/ASTEC-examples

In Toto Imaging and Reconstruction of Post-Implantation Mouse Development at the Single-Cell Level

Katie McDole*, Léo Guignard*, Fernando Amat, Andrew Berger, Grégoire Malandain, Loïc Royer, Srinivas Turaga, Kristin Branson, Philipp J.Keller*

Cell, 2018

Featured in:

Related code:

leoguignard/standalone-Mouse

All Publications

2021

Automated Reconstruction of Whole-Embryo Cell Lineages by Learning from Sparse Annotations

Malin-Mayor C., Hirsch P., Guignard L., McDole K., Wan Y., Lemon W., Keller P., Preibisch S., Funke J.
bioRxiv, 2021

2020

Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites

Veenvliet J., Bolondi A., Kretzmer H., Haut L., Scholze-Wittler M., Schifferl D., Koch, Guignard L., Sampath Kumar A., Pustet M., Heimann S., Buschow R., Wittler L., Timmermann B., Meissner A., Herrmann B.

Science, 2020

Contact-area dependent cell communication and the morphological invariance of ascidian embryogenesis

Guignard L.*, Fiuza U.-M.*, Leggio B., Laussu J., Faure E., K., Michelin G., Biasuz K., Hufnagel L., Malandain G., Godin C., Lemaire P.

Science, 2020

2019

Evolution of embryonic cis-regulatory landscapes between divergent Phallusia and Ciona ascidians

Madgwick A., Silvia Magri M., Dantec C., Gailly D., Fiuza U.-M., Guignard L., Hettinger S., Gomez- Skarmeta J.-L., Lemaire P.

Developmental Biology, 2019

2018

In Toto Imaging and Reconstruction of Post-Implantation Mouse Development at the Single-Cell Level

McDole K.*, Guignard L.*, Amat F., Berger A., Malandain G., Royer L., Turaga S., Branson K., Keller P.*

Cell, 2018

Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb

Wolff C., Tinevez J.-Y., Pietzsch T., Stamataki E., Harich B., Guignard L., Preibisch S., Shorte S., Keller P., Tomancak P., Pavlopoulos A.

eLife, 2018

2015

Cell pairings for ascidian embryo registration

Michelin G., Guignard L., Fiuza U.-M., Lemaire P., Godin C., Malandain G.

ISBI, 2015

Genome-wide screen identifies a novel p97/CDC-48-dependent pathway regulating ER-stress-induced gene transcription

Marza E., Taouji S., Barroso K., Raymond A.-A., Guignard L., Bonneu M., Pallares-Lupon N., Dupuy J.-W., Fernandez-Zapico M., Rosenbaum J., Palladino F., Dupuy D., Chevet E.

EMBO reports, 2015

2014

Spatio-temporal registration of embryo images

Guignard L., Godin C., Fiuza U.-M., Hufnagel L., Lemaire P., Malandain G.

ISBI, 2014

Embryo cell membrane reconstruction by tensor voting

Michelin G., Guignard L., Fiuza U.-M., Malandain G.

ISBI, 2014