Guignard Lab
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image, napari, registration, segmentation, Cell signalling
A fully-visual pipeline for quantitative analysis of 3D organoid images acquired with deep imaging microscopy.
GitHub Link:
single-cell, transcriptomics
A library to manipulate 3D spatial transcriptomics
registration, image
A library to register 3D movies in space and/or time
napari, single-cell, transcriptomics
A viewer for 3D spatial transcriptomics
napari, image, registration
A napari plugin to use registration-tools more easily
lineage-tree
A library to handle lineage trees
Education, Modelling
Course to learn Python using turing models
segmentation, cell-tracking, registration
Early version of the cell detection and tracking algorithm developed for Guignard et al. 2020
image, segmented, napari
A napari plugin to load .obj files
cell-tracking, image, segmentation
Statistical Vector Flow library
image, cell-tracking
Standalone version of the code developed pour McDole et al. 2018
Modelling, Cell signalling
Model for cell-cell interaction developed for Guignard et al. 2020
